Advancements in gene therapy are pushing the boundaries of treating genetic diseases. A new technique, StitchR (Stitch RNA), leverages ribozyme-activated mRNA trans-ligation to deliver large genes, enabling novel treatments for muscular dystrophies (Lindley et al., 2024).
What is StitchR?
StitchR utilizes ribozymes, small catalytic RNA sequences, to cleave mRNA at specific points, creating precise termini for seamless trans-ligation. This mechanism allows two separate mRNA fragments to join, forming full-length transcripts capable of translating functional proteins (Lindley et al., 2024).
Optimizing StitchR for Gene Delivery
Researchers optimized the StitchR system, achieving a 900-fold increase in protein expression levels compared to earlier methods. Enhancements include:
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- StitchR 3.0: Introduced introns to improve protein expression.
- StitchR 4.0: Combined optimal ribozymes for efficiency, producing nearly endogenous levels of protein expression.
These advancements establish StitchR as a robust tool for large-gene therapies (Lindley et al., 2024).
Application in Muscular Dystrophies
The therapy was tested on two significant targets:
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- Dysferlin Deficiency: Loss-of-function mutations in the Dysferlin gene lead to limb-girdle muscular dystrophy. Using StitchR-enabled dual adeno-associated virus (AAV) vectors, researchers restored Dysferlin protein to levels exceeding 100% of normal in muscle and heart tissues in a mouse model (Lindley et al., 2024).
- Duchenne Muscular Dystrophy (DMD): The study used a truncated but functional Dystrophin gene (DH2-R15) delivered via StitchR. The therapy restored muscle structure, normalized creatine kinase levels, and corrected membrane localization of key proteins, matching wild-type Dystrophin functionality (Lindley et al., 2024).
Expanding Possibilities: Genome Editing and Therapeutics
StitchR has applications beyond gene replacement:
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- Genome Editing: Researchers developed StitchR-PE (Prime Editor), delivering CRISPR-based genome-editing tools through dual AAVs. StitchR-PE achieved ~82% efficiency of single-vector systems and offered chemical modulation for controlled gene editing (Lindley et al., 2024).
- Broad Therapeutic Potential: The method’s efficiency in achieving full-length protein expression with minimal truncated products makes it a promising tool for treating other genetic disorders (Lindley et al., 2024).
Integrating the Research into piVector
To further advance gene therapy research, we are excited to announce that the vectors used in this study have been added to our piVector Designer database. This addition allows researchers to access and utilize the same optimized tools for vector design and sequence customization, facilitating cutting-edge applications in gene therapy.
Conclusion
StitchR marks a significant step forward in overcoming the limitations of AAV vector size for gene therapies. Its ability to restore large proteins to therapeutic levels and integrate seamlessly with genome-editing technologies opens new avenues for addressing previously untreatable genetic diseases.
This breakthrough highlights the potential of RNA-based strategies in advancing gene therapy, offering hope to millions affected by debilitating genetic disorders.
Lindley, S. R., Venkata Subbaiah, K. C., Priyanka, F., Poosala, P., Ma, Y., Jalinous, L., West, J. A., Richardson, W. A., Thomas, T. N., & Anderson, D. M. (2024). Ribozyme-activated mRNA trans-ligation enables large gene delivery to treat muscular dystrophies. Science, 386(762–767). DOI: https://www.science.org/doi/10.1126/science.adp8179.

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